//
// Strelka - Small Variant Caller
// Copyright (c) 2009-2018 Illumina, Inc.
//
// This program is free software: you can redistribute it and/or modify
// it under the terms of the GNU General Public License as published by
// the Free Software Foundation, either version 3 of the License, or
// at your option) any later version.
//
// This program is distributed in the hope that it will be useful,
// but WITHOUT ANY WARRANTY; without even the implied warranty of
// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
// GNU General Public License for more details.
//
// You should have received a copy of the GNU General Public License
// along with this program.  If not, see <http://www.gnu.org/licenses/>.
//
//

///
/// \author Chris Saunders
///

#pragma once

#include "blt_common/snp_pos_info.hh"


/// \brief call a strand coverage anomaly with FPR = alpha
///
bool
position_strand_coverage_anomaly(const double alpha,
                                 const snp_pos_info& pi);

#if 0
/// \brief return the p-value of the strand coverage anomaly test
///
double
position_strand_coverage_anomaly_pval(const snp_pos_info& pi);
#endif
